presentation
  JP Bourgin
  access
  contact
  job opportunities
  teaching resources
  Marie-Curie Site
  cell biology
  genetics & plant breeding
  plant nitrogen nutrition
  seed biology
  cell imaging
  biochemistry
  resource centre
IJPB
bc gap nap bs
iNRA
presentation unites services communs intranet liens plan du site
 

The V.A.S.T lab

Variation and Abiotic Stress Tolerance

 

     
   Projects  
   Publications  
   People  
   Arabidopsis RILs  
   New collections  
   MSAT Database  
   Useful Links  
     
 


  Below are links toward websites of interest to the analysis of natural variation in Arabidopsis, either collaborators and other labs in the community, or useful tools, software and resources.


 


         Useful resource (markers, polymorphisms, plant material... )

  Weigel POLYMORPH tool to find SNPs between accessions (Perlegen re-sequencing data, also on TAIR and SIGnAL)

  Magnus Nordborg database for polymorphisms (NSF 2010 projects)

  MSQT tool to extract polymorphisms information from databases

  The local MSAT database (microsatellites)

  TAIR (The Arabidopsis Information Resource)

  VNAT website (natural variation resource from INRA Versailles)

  NASC - Nottingham Arabidopsis Stock Center

  ABRC - Arabidopsis Biological Resource Center (North-American stock center)

  Sendai SASSC - Japanese Arabidopsis Seed stock center

  Arabidopsis Tilling project


         Useful tools and software

  WebQTL, online tool for QTL and eQTL mapping

  QTLReaper Project (the origin of WebQTL algorythms)

  QTL Cartographer

  Mapmaker

  GGT32, a very nice tool to graphically represent the genotype of individuals (for example RILs)

  Blast Digester - CAPS marker designer online

  Primer3 tool to design primers

  Marker tracker from University of Toronto


 

© INRA 2007
home -