Meloidogyne incognita ressources

Meloidogyne incognita ressources
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Accession codes

The 9,538 contigs resulting from the Meloidogyne incognita genome assembly and annotation were deposited in the EMBL/Genbank/DDBJ databases under accession numbers CABB01000001– CABB01009538.


Predicted protein

Protein sequences were predicted using Eugene software. These protein sequences are avalaible for download.

Download protein fasta: MincV1A1.fasta
Right click on 'MincV1A1.fasta" and "Save Target as...".
 

Transcriptomic dataset

RNA-seq transcriptome sequencing for different developmental lifestages of M. incognita. RNA-seq generated more than 190 million reads in total that were assembled in 137,733 contigs (see Table below). These contigs sequences are avalaible for download.


Life stage

Reads used for assembly

Contigs

Eggs

12,467,657

26,570 >>>

Early sedentary

13,295,793

18,485 >>>

Parasitic sedentary

15,558,421

18,045 >>>

Stage 3 and 4 larvae

12,859,902

8,272 >>>  

Adult female

14,953,875

13,071 >>>

Adult male

16,995,332

29,321 >>>

Mixed stages

12,082,564

23,969 >>>
 
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Writing: Plant-Nematode interaction team, Inra Paca
Creation date: 27 November 2009
Update: 07 June 2013